If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ), 'gf_id' => 'HOM05D000893', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000893' ), 'data_identifier' => 'HOM05D000893', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000893', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10250' => 'bna', 'A03p25730' => 'bna', 'A04p34500' => 'bna', 'A05p01180' => 'bna', 'A10p11730' => 'bna', 'Aa31LG1G28010' => 'aar', 'Aa31LG3G10420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1178' => 'aag', 'Actinidia05550' => 'ach', 'Actinidia09935' => 'ach', 'Actinidia12479' => 'ach', 'Actinidia18737' => 'ach', 'Actinidia20261' => 'ach', 'Actinidia26963' => 'ach', 'Actinidia26972' => 'ach', 'Actinidia26981' => 'ach', 'Actinidia27027' => 'ach', 'Actinidia35289' => 'ach', 'Actinidia35290' => 'ach', 'Ah.04g165290' => 'amhyb', 'Ah.05g179280' => 'amhyb', 'Ah.06g183320' => 'amhyb', 'Ah.06g183370' => 'amhyb', 'Ah.09g236620' => 'amhyb', 'AL4G46030' => 'aly', 'AL7G25540' => 'aly', 'AL8G29840' => 'aly', 'Aqoxy1G02224' => 'aox', 'Aqoxy4G01968' => 'aox', 'Aqoxy7G00038' => 'aox', 'arahy.Tifrunner.gnm1.ann1.49U33C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.776LRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM50A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1U7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DSV9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8FA69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSW943' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W23ER8' => 'arhy', 'AT2G46600' => 'ath', 'AT4G27280' => 'ath', 'AT5G54490' => 'ath', 'ATR0499G005' => 'atr', 'ATR0658G002' => 'atr', 'ATR0658G003' => 'atr', 'ATR0706G067' => 'atr', 'ATR0810G260' => 'atr', 'Atru.chr10.2039' => 'acertr', 'Atru.chr2.2946' => 'acertr', 'Atru.chr2.3052' => 'acertr', 'Atru.chr2.3090' => 'acertr', 'Atru.chr5.718' => 'acertr', 'Atru.chr6.3102' => 'acertr', 'AUR62004527' => 'cqu', 'AUR62012515' => 'cqu', 'AUR62014684' => 'cqu', 'AUR62022728' => 'cqu', 'AUR62025152' => 'cqu', 'AUR62029282' => 'cqu', 'AUR62029287' => 'cqu', 'AUR62031048' => 'cqu', 'AUR62041155' => 'cqu', 'AUR62041162' => 'cqu', 'BcaB01g03201' => 'bca', 'BcaB05g22139' => 'bca', 'BcaB08g35807' => 'bca', 'BcaC01g05058' => 'bca', 'BcaC02g07021' => 'bca', 'BcaC02g07048' => 'bca', 'BcaC02g12665' => 'bca', 'BcaC02g12675' => 'bca', 'BcaC03g14310' => 'bca', 'BcaC04g20333' => 'bca', 'BcaC09g50590' => 'bca', 'BcaNung03047' => 'bca', 'BcaNung06414' => 'bca', 'BolC1t02286H' => 'bol', 'BolC2t07798H' => 'bol', 'BolC3t15418H' => 'bol', 'BolC4t21787H' => 'bol', 'BolC4t28714H' => 'bol', 'BolC9t57355H' => 'bol', 'BraA01t01795Z' => 'bra', 'BraA02t06095Z' => 'bra', 'BraA03t11786Z' => 'bra', 'BraA04t18908Z' => 'bra', 'BraA05t19120Z' => 'bra', 'BraA10t43269Z' => 'bra', 'C01p23440' => 'bna', 'C02p16990' => 'bna', 'C03p30660' => 'bna', 'C04p01340' => 'bna', 'C04p72270' => 'bna', 'C09p44830' => 'bna', 'CAN.G1110.30' => 'can', 'CAN.G1110.34' => 'can', 'CAN.G1415.10' => 'can', 'CAN.G162.115' => 'can', 'CAN.G271.11' => 'can', 'CAN.G289.20' => 'can', 'CAN.G424.62' => 'can', 'CAN.G424.79' => 'can', 'CAN.G640.6' => 'can', 'CANSAT11G1614' => 'cansat', 'CANSAT56G1671' => 'cansat', 'CANSAT56G2047' => 'cansat', 'CANSAT56G3816' => 'cansat', 'CANSAT64G1467' => 'cansat', 'CARHR141960' => 'chi', 'CARHR234940' => 'chi', 'CARHR267770' => 'chi', 'Carub.0004s2932' => 'cru', 'Carub.0007s1359' => 'cru', 'Carub.0008s1477' => 'cru', 'Ca_00223_v3' => 'car', 'Ca_01557_v3' => 'car', 'Ca_01789_v3' => 'car', 'Ca_01791_v3' => 'car', 'Ca_22924_v3' => 'car', 'Ca_23509_v3' => 'car', 'Ca_26202_v3' => 'car', 'Cc02_g12140' => 'ccan', 'Cc02_g12150' => 'ccan', 'Cc02_g14030' => 'ccan', 'Cc02_g39680' => 'ccan', 'Cc05_g05650' => 'ccan', 'Cc05_g12850' => 'ccan', 'Cc05_g12900' => 'ccan', 'CDE05G0845' => 'cde', 'CDE05G3625' => 'cde', 'CDE12G0652' => 'cde', 'Cfa003771' => 'cfa', 'Cfa014485' => 'cfa', 'Cfa014486' => 'cfa', 'Cfa020484' => 'cfa', 'Ciclev10009957m.g' => 'ccl', 'Ciclev10009963m.g' => 'ccl', 'Ciclev10010422m.g' => 'ccl', 'Ciclev10010611m.g' => 'ccl', 'Ciclev10017223m.g' => 'ccl', 'Ciclev10018128m.g' => 'ccl', 'Ciclev10022851m.g' => 'ccl', 'CiPaw.01G078800' => 'cil', 'CiPaw.03G165900' => 'cil', 'CiPaw.09G156100' => 'cil', 'CiPaw.10G115400' => 'cil', 'CiPaw.11G179200' => 'cil', 'CiPaw.11G179500' => 'cil', 'CiPaw.12G123800' => 'cil', 'ClCG00G003740' => 'cla', 'ClCG02G011280' => 'cla', 'ClCG03G005410' => 'cla', 'ClCG06G002680' => 'cla', 'ClCG10G005840' => 'cla', 'ClCG10G006390' => 'cla', 'COL.COLO4_06247' => 'col', 'COL.COLO4_09511' => 'col', 'COL.COLO4_13050' => 'col', 'COL.COLO4_31640' => 'col', 'COL.COLO4_31641' => 'col', 'Cpa.g.c33359' => 'cpa', 'Cpa.g.sc12.5' => 'cpa', 'Cpa.g.sc34.52' => 'cpa', 'Cpa.g.sc871.6' => 'cpa', 'CsaV3_1G011690' => 'csa', 'CsaV3_3G005500' => 'csa', 'CsaV3_3G005850' => 'csa', 'CsaV3_6G008810' => 'csa', 'CsaV3_6G012270' => 'csa', 'CSS0000521' => 'camsi', 'CSS0001289' => 'camsi', 'CSS0005753' => 'camsi', 'CSS0006844' => 'camsi', 'CSS0010205' => 'camsi', 'CSS0011002' => 'camsi', 'CSS0011555' => 'camsi', 'CSS0012273' => 'camsi', 'CSS0016905' => 'camsi', 'CSS0016994' => 'camsi', 'CSS0017496' => 'camsi', 'CSS0019070' => 'camsi', 'CSS0019798' => 'camsi', 'CSS0023240' => 'camsi', 'CSS0025901' => 'camsi', 'CSS0030007' => 'camsi', 'CSS0038888' => 'camsi', 'CSS0039151' => 'camsi', 'CSS0042548' => 'camsi', 'CSS0045758' => 'camsi', 'CSS0046740' => 'camsi', 'CSS0048450' => 'camsi', 'CSS0049167' => 'camsi', 'DCAR_002992' => 'dca', 'DCAR_009703' => 'dca', 'DCAR_009998' => 'dca', 'DCAR_021203' => 'dca', 'DCAR_022126' => 'dca', 'Dinv08363' => 'din', 'Dinv18570' => 'din', 'Dinv18975' => 'din', 'Dinv32614' => 'din', 'Dinv40456' => 'din', 'Duzib052G0477' => 'dzi', 'Duzib132G0021' => 'dzi', 'Duzib133G0694' => 'dzi', 'Duzib138G1056' => 'dzi', 'Duzib160G0123' => 'dzi', 'Duzib160G0237' => 'dzi', 'Duzib170G0835' => 'dzi', 'Duzib192G1042' => 'dzi', 'Duzib213G0061' => 'dzi', 'Duzib213G0561' => 'dzi', 'Duzib235G0101' => 'dzi', 'Duzib235G0121' => 'dzi', 'Duzib248G0269' => 'dzi', 'Duzib268G0558' => 'dzi', 'Duzib268G1031' => 'dzi', 'Duzib268G1499' => 'dzi', 'ECA233G4757' => 'eca', 'ECA234G2289' => 'eca', 'ECA246G5344' => 'eca', 'EL10Ac1g00227' => 'bvu', 'EL10Ac4g08033' => 'bvu', 'EL10Ac4g08036' => 'bvu', 'EL10Ac8g19878' => 'bvu', 'EL10Ac8g19984' => 'bvu', 'EL10Ac9g20718' => 'bvu', 'Eucgr.D00773' => 'egr', 'Eucgr.D02392' => 'egr', 'Eucgr.E03672' => 'egr', 'Eucgr.F01062' => 'egr', 'Eucgr.F03381' => 'egr', 'Eucgr.I02479' => 'egr', 'Eucgr.K00884' => 'egr', 'FAN01G2628' => 'fan', 'FAN01G2820' => 'fan', 'FAN05G1870' => 'fan', 'FAN06G0026' => 'fan', 'FAN06G0511' => 'fan', 'FAN10G0811' => 'fan', 'FAN10G3910' => 'fan', 'FAN11G1265' => 'fan', 'FAN11G2718' => 'fan', 'FAN11G3410' => 'fan', 'FAN11G3749' => 'fan', 'FAN16G0032' => 'fan', 'FAN16G1131' => 'fan', 'FAN16G1904' => 'fan', 'FAN21G0159' => 'fan', 'FAN21G0512' => 'fan', 'FAN21G2375' => 'fan', 'FAN21G3985' => 'fan', 'FAN25G1128' => 'fan', 'FAN25G2506' => 'fan', 'FAN25G2768' => 'fan', 'FAN25G2992' => 'fan', 'FvH4_3g03600' => 'fve', 'FvH4_3g03610' => 'fve', 'FvH4_3g21240' => 'fve', 'FvH4_3g21340' => 'fve', 'FvH4_6g44030' => 'fve', 'FvH4_6g44060' => 'fve', 'FvH4_7g17080' => 'fve', 'Glyma.03G259100' => 'gma', 'Glyma.06G255700' => 'gma', 'Glyma.06G258000' => 'gma', 'Glyma.07G053300' => 'gma', 'Glyma.12G103600' => 'gma', 'Glyma.12G142900' => 'gma', 'Glyma.12G145900' => 'gma', 'Glyma.12G197900' => 'gma', 'Glyma.12G217500' => 'gma', 'Glyma.12G217700' => 'gma', 'Glyma.13G248200' => 'gma', 'Glyma.13G282900' => 'gma', 'Glyma.13G283600' => 'gma', 'Glyma.13G303900' => 'gma', 'Glyma.15G065700' => 'gma', 'Glyma.16G022400' => 'gma', 'Glyma.19G257800' => 'gma', 'Gohir.A01G070200' => 'ghi', 'Gohir.A01G070900' => 'ghi', 'Gohir.A04G024800' => 'ghi', 'Gohir.A05G166800' => 'ghi', 'Gohir.A06G130500' => 'ghi', 'Gohir.A07G048700' => 'ghi', 'Gohir.A07G187765' => 'ghi', 'Gohir.A08G020500' => 'ghi', 'Gohir.A10G018900' => 'ghi', 'Gohir.A12G113800' => 'ghi', 'Gohir.A12G135600' => 'ghi', 'Gohir.A13G058100' => 'ghi', 'Gohir.A13G143000' => 'ghi', 'Gohir.D01G057400' => 'ghi', 'Gohir.D01G057933' => 'ghi', 'Gohir.D05G169800' => 'ghi', 'Gohir.D05G362600' => 'ghi', 'Gohir.D06G126700' => 'ghi', 'Gohir.D07G052966' => 'ghi', 'Gohir.D07G153250' => 'ghi', 'Gohir.D08G031100' => 'ghi', 'Gohir.D10G019800' => 'ghi', 'Gohir.D12G117300' => 'ghi', 'Gohir.D12G139600' => 'ghi', 'Gohir.D13G063900' => 'ghi', 'Gohir.D13G147600' => 'ghi', 'Gorai.001G056000' => 'gra', 'Gorai.002G077800' => 'gra', 'Gorai.002G078700' => 'gra', 'Gorai.004G028700' => 'gra', 'Gorai.008G127100' => 'gra', 'Gorai.008G150700' => 'gra', 'Gorai.009G175000' => 'gra', 'Gorai.009G429900' => 'gra', 'Gorai.010G147900' => 'gra', 'Gorai.011G021000' => 'gra', 'Gorai.013G072600' => 'gra', 'Gorai.013G165400' => 'gra', 'GSVIVG01013226001' => 'vvi', 'GSVIVG01013228001' => 'vvi', 'GSVIVG01014539001' => 'vvi', 'HanXRQChr05g0158971' => 'han', 'HanXRQChr10g0317061' => 'han', 'HanXRQChr11g0332221' => 'han', 'HanXRQChr11g0332251' => 'han', 'HanXRQChr13g0407531' => 'han', 'HanXRQChr15g0479231' => 'han', 'HanXRQChr15g0479241' => 'han', 'HanXRQChr15g0479401' => 'han', 'HanXRQChr15g0479411' => 'han', 'HanXRQChr15g0479421' => 'han', 'HanXRQChr16g0524701' => 'han', 'HanXRQChr17g0543081' => 'han', 'HanXRQChr17g0563261' => 'han', 'Haze_06617' => 'cav', 'Haze_09555' => 'cav', 'Haze_10875' => 'cav', 'Haze_13004' => 'cav', 'Haze_13005' => 'cav', 'Haze_15691' => 'cav', 'Hma1.2p1_0024F.1_g016000' => 'hma', 'Hma1.2p1_0180F.1_g079670' => 'hma', 'Hma1.2p1_0314F.1_g122150' => 'hma', 'Hma1.2p1_0971F.1_g242750' => 'hma', 'Hma1.2p1_1258F.1_g270950' => 'hma', 'Hma1.2p1_1258F.1_g270960' => 'hma', 'Hma1.2p1_1576F.1_g291690' => 'hma', 'Hma1.2p1_1616F.1_g293760' => 'hma', 'HPP92_002210' => 'vpl', 'HPP92_004149' => 'vpl', 'HPP92_013247' => 'vpl', 'HPP92_013252' => 'vpl', 'HPP92_014084' => 'vpl', 'HPP92_021004' => 'vpl', 'HPP92_021105' => 'vpl', 'HPP92_026539' => 'vpl', 'Lalb_Chr04g0254321' => 'lal', 'Lalb_Chr19g0134581' => 'lal', 'Lalb_Chr19g0135601' => 'lal', 'Lalb_Chr20g0110141' => 'lal', 'Lalb_Chr22g0356251' => 'lal', 'Lj3g0000966' => 'lja', 'Lj3g0002335' => 'lja', 'Lj3g0011368' => 'lja', 'Lj3g0013462' => 'lja', 'Lj3g0013940' => 'lja', 'Lj3g0016452' => 'lja', 'Lj5g0019686' => 'lja', 'Lj6g0021986' => 'lja', 'Lsat_1_v5_gn_1_53381' => 'lsa', 'Lsat_1_v5_gn_4_30761' => 'lsa', 'Lsat_1_v5_gn_7_107421' => 'lsa', 'Lsat_1_v5_gn_7_107461' => 'lsa', 'Lsat_1_v5_gn_9_95381' => 'lsa', 'Manes.01G243300' => 'mes', 'Manes.03G117950' => 'mes', 'Manes.03G118300' => 'mes', 'Manes.05G020000' => 'mes', 'Manes.12G079300' => 'mes', 'Manes.15G080700' => 'mes', 'Manes.15G081100' => 'mes', 'Manes.16G019156' => 'mes', 'Manes.17G032550' => 'mes', 'Mapoly0010s0016' => 'mpo', 'MBI02_g03994_MAGBIO' => 'mbi', 'MBI04_g06926_MAGBIO' => 'mbi', 'MBI18_g24169_MAGBIO' => 'mbi', 'MBI19_g16678_MAGBIO' => 'mbi', 'MD01G1085500' => 'mdo', 'MD03G1185700' => 'mdo', 'MD03G1186200' => 'mdo', 'MD05G1329200' => 'mdo', 'MD05G1329300' => 'mdo', 'MD05G1329500' => 'mdo', 'MD07G1154400' => 'mdo', 'MD09G1101400' => 'mdo', 'MD10G1306100' => 'mdo', 'MD10G1306200' => 'mdo', 'MD11G1233100' => 'mdo', 'MD11G1233900' => 'mdo', 'MD17G1088900' => 'mdo', 'Medtr1g052885' => 'mtr', 'Medtr2g011400' => 'mtr', 'Medtr2g081300' => 'mtr', 'Medtr2g081350' => 'mtr', 'Medtr2g081440' => 'mtr', 'Medtr2g081580' => 'mtr', 'Medtr2g089210' => 'mtr', 'Medtr8g027180' => 'mtr', 'Medtr8g466250' => 'mtr', 'MELO3C016569.2' => 'cme', 'MELO3C022259.2' => 'cme', 'MELO3C025433.2' => 'cme', 'Migut.B01900' => 'egut', 'Migut.H01881' => 'egut', 'Migut.M00374' => 'egut', 'Migut.M01239' => 'egut', 'Migut.M01841' => 'egut', 'MSTRG.12939' => 'ama', 'MSTRG.14395' => 'ama', 'MSTRG.14658' => 'ama', 'MSTRG.6538' => 'ama', 'MSTRG.7271' => 'ama', 'Nitab4.5_0000207g0360' => 'nta', 'Nitab4.5_0000207g0410' => 'nta', 'Nitab4.5_0000207g0450' => 'nta', 'Nitab4.5_0000273g0030' => 'nta', 'Nitab4.5_0000273g0150' => 'nta', 'Nitab4.5_0000297g0240' => 'nta', 'Nitab4.5_0000917g0020' => 'nta', 'Nitab4.5_0001134g0020' => 'nta', 'Nitab4.5_0001223g0070' => 'nta', 'Nitab4.5_0001223g0120' => 'nta', 'Nitab4.5_0001252g0040' => 'nta', 'Nitab4.5_0001902g0020' => 'nta', 'Nitab4.5_0004384g0050' => 'nta', 'Nitab4.5_0004384g0060' => 'nta', 'Nitab4.5_0009492g0020' => 'nta', 'Nitab4.5_0011213g0010' => 'nta', 'Nn1g00354' => 'nnu', 'Nn1g03783' => 'nnu', 'Nn1g03802' => 'nnu', 'Nn1g03804' => 'nnu', 'Nn1g03805' => 'nnu', 'Nn1g03806' => 'nnu', 'Nn1g03807' => 'nnu', 'Nn1g03808' => 'nnu', 'Nn1g06844' => 'nnu', 'Nn1g06854' => 'nnu', 'Nn1g06855' => 'nnu', 'Nn1g06856' => 'nnu', 'Nn1g06885' => 'nnu', 'Nn4g24980' => 'nnu', 'Nn4g24981' => 'nnu', 'Oeu004968.1' => 'oeu', 'Oeu016139.1' => 'oeu', 'Oeu019474.1' => 'oeu', 'Oeu029442.1' => 'oeu', 'Oeu042949.2' => 'oeu', 'Oeu043265.1' => 'oeu', 'Oeu053398.1' => 'oeu', 'Oeu061255.1' => 'oeu', 'Os01g0783700' => 'osa', 'Os02g0122600' => 'osa', 'Os06g0683400' => 'osa', 'Peaxi162Scf00000g00801' => 'pax', 'Peaxi162Scf00007g01610' => 'pax', 'Peaxi162Scf00087g00213' => 'pax', 'Peaxi162Scf00257g01610' => 'pax', 'Peaxi162Scf00631g00011' => 'pax', 'Peaxi162Scf00631g00021' => 'pax', 'Peaxi162Scf00631g00031' => 'pax', 'Peaxi162Scf01216g00017' => 'pax', 'PGR004G0857' => 'pgr', 'PGR031G2374' => 'pgr', 'PGR042G0143' => 'pgr', 'PGR083G0037' => 'pgr', 'PGR083G2004' => 'pgr', 'PGR142G0216' => 'pgr', 'PGSC0003DMG400005063' => 'stu', 'PGSC0003DMG400013888' => 'stu', 'PGSC0003DMG400018884' => 'stu', 'PGSC0003DMG400019243' => 'stu', 'PGSC0003DMG400022340' => 'stu', 'PGSC0003DMG400025000' => 'stu', 'PGSC0003DMG400025022' => 'stu', 'PGSC0003DMG400025023' => 'stu', 'PGSC0003DMG400026159' => 'stu', 'Phvul.005G087900' => 'pvu', 'Phvul.005G088600' => 'pvu', 'Phvul.005G110950' => 'pvu', 'Phvul.006G115300' => 'pvu', 'Phvul.006G194000' => 'pvu', 'Phvul.010G116000' => 'pvu', 'Phvul.011G108600' => 'pvu', 'Phvul.011G149700' => 'pvu', 'Potri.001G412077' => 'ptr', 'Potri.001G414600' => 'ptr', 'Potri.002G174900' => 'ptr', 'Potri.004G027200' => 'ptr', 'Potri.011G039500' => 'ptr', 'Potri.011G039600' => 'ptr', 'Potri.011G125300' => 'ptr', 'Potri.011G129100' => 'ptr', 'Potri.013G151000' => 'ptr', 'Potri.014G101700' => 'ptr', 'Potri.019G120600' => 'ptr', 'Prupe.2G193100' => 'ppe', 'Prupe.3G224800' => 'ppe', 'Prupe.4G033300' => 'ppe', 'Prupe.4G033400' => 'ppe', 'Prupe.4G033500' => 'ppe', 'Prupe.4G192800' => 'ppe', 'Prupe.4G193800' => 'ppe', 'Psat0s1162g0080' => 'psa', 'Psat1g210280' => 'psa', 'Psat4g163000' => 'psa', 'Psat5g247760' => 'psa', 'Psat5g248000' => 'psa', 'Psat5g267280' => 'psa', 'Psat5g267320' => 'psa', 'PSO063G4987' => 'pso', 'PSO210G0255' => 'pso', 'PSO782G1795' => 'pso', 'PSO832G3590' => 'pso', 'QL05p080097' => 'qlo', 'QL05p080437' => 'qlo', 'QL08p016145' => 'qlo', 'QL08p016908' => 'qlo', 'QL08p017083' => 'qlo', 'QL08p034567' => 'qlo', 'QL08p046088' => 'qlo', 'RcHm_v2.0_Chr1g0360491' => 'rch', 'RcHm_v2.0_Chr2g0160761' => 'rch', 'RcHm_v2.0_Chr5g0005661' => 'rch', 'RcHm_v2.0_Chr5g0005671' => 'rch', 'RcHm_v2.0_Chr5g0036321' => 'rch', 'RcHm_v2.0_Chr5g0036541' => 'rch', 'Rhsim01G0176000' => 'rsi', 'Rhsim02G0081900' => 'rsi', 'Rhsim02G0117600' => 'rsi', 'Rhsim02G0118000' => 'rsi', 'Rhsim05G0003200' => 'rsi', 'Rhsim06G0154200' => 'rsi', 'Rhsim06G0191100' => 'rsi', 'Rhsim06G0191600' => 'rsi', 'Rhsim07G0002000' => 'rsi', 'Rhsim13G0167500' => 'rsi', 'RhsimUnG0256100' => 'rsi', 'Sabra02G0138700' => 'sbr', 'Sabra04G0015500' => 'sbr', 'Sabra11G0027300' => 'sbr', 'Sabra11G0112300' => 'sbr', 'Sabra11G0116700' => 'sbr', 'Sabra13G0121300' => 'sbr', 'Sabra14G0074800' => 'sbr', 'Sabra16G0272200' => 'sbr', 'Sabra16G0275200' => 'sbr', 'Sabra16G0277200' => 'sbr', 'Sabra16G0279100' => 'sbr', 'Sabra19G0120900' => 'sbr', 'Sabra19G0121100' => 'sbr', 'Sabra19G0133100' => 'sbr', 'SalBow3G1340' => 'sbo', 'SalBow3G3217' => 'sbo', 'SalBow7G0048' => 'sbo', 'SalBow7G1228' => 'sbo', 'SalBow8G3929' => 'sbo', 'SalBow8G4426' => 'sbo', 'Sc03g0009500' => 'sci', 'Sc07g0002690' => 'sci', 'Sc12g0002560' => 'sci', 'Sc17g0006770' => 'sci', 'Sc20g0005610' => 'sci', 'Sed0000105' => 'sed', 'Sed0006059' => 'sed', 'Sed0016427' => 'sed', 'Sed0026785' => 'sed', 'Sed0026860' => 'sed', 'SEGI_15786' => 'sgi', 'SEGI_19230' => 'sgi', 'SEGI_23577' => 'sgi', 'SEGI_24232' => 'sgi', 'SEGI_25054' => 'sgi', 'SEGI_35979' => 'sgi', 'SEGI_38789' => 'sgi', 'SGA_v2.0_scaffold232G43541' => 'sas', 'SGA_v2.0_scaffold34G13897' => 'sas', 'SGA_v2.0_scaffold495G52462' => 'sas', 'SGA_v2.0_scaffold581G53047' => 'sas', 'SGA_v2.0_scaffold70G23583' => 'sas', 'SHI10266' => 'shi', 'SMO117G0296' => 'smo', 'Solyc02g079520.3' => 'sly', 'Solyc02g079720.1' => 'sly', 'Solyc03g006710.1' => 'sly', 'Solyc07g053050.1' => 'sly', 'Solyc07g063690.1' => 'sly', 'Solyc10g006660.3' => 'sly', 'Solyc10g006700.1' => 'sly', 'Solyc10g006740.4' => 'sly', 'Solyc10g009340.1' => 'sly', 'Sopen02g024340' => 'spe', 'Sopen02g024480' => 'spe', 'Sopen03g002730' => 'spe', 'Sopen07g026600' => 'spe', 'Sopen07g031870' => 'spe', 'Sopen10g002600' => 'spe', 'Sopen10g002620' => 'spe', 'Sopen10g002660' => 'spe', 'Sopen10g005130' => 'spe', 'Sp4g28650' => 'spa', 'Sp6g16460' => 'spa', 'Sp7g25200' => 'spa', 'TAR369G0102' => 'tar', 'TAR624G0472' => 'tar', 'TAR624G1133' => 'tar', 'TAR627G0018' => 'tar', 'TAR627G1000' => 'tar', 'TAR627G1039' => 'tar', 'TAR629G2690' => 'tar', 'TAR629G2848' => 'tar', 'TAR633G1394' => 'tar', 'THA.LOC104799897' => 'tha', 'THA.LOC104813399' => 'tha', 'THA.LOC104817384' => 'tha', 'Thecc.01G338100' => 'tca', 'Thecc.02G166100' => 'tca', 'Thecc.06G202900' => 'tca', 'Thecc.06G203000' => 'tca', 'Thecc.07G062900' => 'tca', 'Thecc.07G068400' => 'tca', 'Thhalv10001678m.g' => 'esa', 'Thhalv10015021m.g' => 'esa', 'Thhalv10026554m.g' => 'esa', 'TPR.G15923' => 'tpr', 'TPR.G18065' => 'tpr', 'TPR.G19605' => 'tpr', 'TPR.G24538' => 'tpr', 'TPR.G33111' => 'tpr', 'TPR.G33154' => 'tpr', 'TPR.G33157' => 'tpr', 'TWI36G0822' => 'twi', 'TWI38G0017' => 'twi', 'TWI38G0365' => 'twi', 'TWI38G1563' => 'twi', 'TWI38G2305' => 'twi', 'TWI38G2412' => 'twi', 'TWI39G0005' => 'twi', 'TWI39G0868' => 'twi', 'TWI59G0366' => 'twi', 'TWI63G0362' => 'twi', 'unitig_45.g31544' => 'ugi', 'unitig_578.g16504' => 'ugi', 'unitig_746.g26652' => 'ugi', 'unitig_899.g15249' => 'ugi', 'unitig_899.g15338' => 'ugi', 'vmacro03780' => 'vma', 'vmacro03783' => 'vma', 'vmacro11792' => 'vma', 'vmacro11804' => 'vma', 'VMungo0121G0001' => 'vmu', 'VMungo0331G1365' => 'vmu', 'VMungo0540G0936' => 'vmu', 'VMungo0540G1660' => 'vmu', 'VMungo1080G0167' => 'vmu', 'VMungo1080G0540' => 'vmu', 'VMungo1127G1278' => 'vmu', 'VMungo1127G2170' => 'vmu', 'Zm00001eb034720' => 'zma', 'Zm00001eb151350' => 'zma', 'Zm00001eb208480' => 'zma', 'Zm00001eb225410' => 'zma' ) $gf_id = 'HOM05D000893' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000893' ) $data_identifier = 'HOM05D000893' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 23, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'lal' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 14, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 3, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225410' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1